Copper napthanate is the good stuff, strongest that can be purchased/applied by laymen without a license. But I suspect, way overkill for your situation. Replace the subfloor if that's what it takes to make you sleep better at night. Me, I'd look at a less labor-intensive approach, as in just giving it a shot of bleach, then filling in any low spots with Duroc water putty and sanding smooth before putting down the new floor surfacing.
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